PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G0711
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 419aa    MW: 48041.9 Da    PI: 4.0851
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G0711genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.37.2e-17185269286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt++e+l+L++a  +   + +r++l+   W+ev++k++e  ++er+ +qC+++++ l+k+ykk+k++  + t +++s+++yf++++
  Gh_A10G0711 185 WTEHETLVLLDAWGDCFLQCGRKSLRTEEWQEVAEKVSEIsKIERTETQCRNRLDTLKKKYKKEKAMLTE-TGGTTSKWVYFKKVD 269
                  *************************************775278**************************9.689999******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.9E-21184270No hitNo description
Gene3DG3DSA:1.10.10.603.8E-4185250IPR009057Homeodomain-like
PROSITE profilePS500906.191185242IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDDIEDDARY PPNPYGVSHQ QGYGSSNPQK LPLRNIPSSR PIRNQYVDDD EDGEDEVEDL  60
GEEEETLNRS NGVRYVGEGM DDEDEDEDED EDEDEDEDED EDDDDEEEEE EEDDLLDDDE  120
EEDDYNEGGD DRKNVVANLG RHPKKRKLKS LVSSYEFAPR VPTPAVAAPS VLKSSYGGRN  180
SLTDWTEHET LVLLDAWGDC FLQCGRKSLR TEEWQEVAEK VSEISKIERT ETQCRNRLDT  240
LKKKYKKEKA MLTETGGTTS KWVYFKKVDM LMSTPPQQGR LSCGFDSGEY VFMNPRVYLN  300
RANGLDEMRD SPANSEFADS EEDVSDGLPP KKRRFGRQSG EDSSVKLLAD SIQKFSDIYE  360
KIENSKRQQM LELEKMRMDF HRELEMQKRQ IMERAQAEIA ELQHGENEAN DASGENASG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.4071e-179boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453753.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A0D2RIK10.0A0A0D2RIK1_G
STRINGPOPTR_0003s05470.11e-133(Populus trichocarpa)
STRINGSolyc12g043090.1.11e-133(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15605916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-67Trihelix family protein